It is not arduous to acquire the chromatin interactions of interests in the search page. Furthermore, we provide complete interaction datasets in download page, facilitating comprehensive analysis based on massive data. For convenience, genome annotation files, enhancer position files and dbSNPs in different versions of different species are offered as well.
Part 1-1: Interaction pairs with annotation (hg38 and mm10)
File | Method | Species | Cell Type | Enhancer | Antibody | Resolution | Geo |
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Part 1-2: Interaction pairs without annotation (hg38 and mm10)
Part 2: Genome annotation file, enhancer positions and SNPs of human and mouse's many cell lines that CCSI database involves can be downloaded as follows:
1. Genome annotation file list
fission yeast.gtf | fission yeast.tss | hg38.gtf | hg38.tss | mm10.gtf | mm10.tss |
readme.txt | saccer2.gtf | saccer2.tss |
2. Enhancer file list
3. SNP list
hg38-db141 | mm10-db137 |
Part 3: Analysis pipeline for annotating genes, regulatory regions and SNPs in chromatin interaction pairs was deposited in github: https://github.com/xiexiaowei/CCSI